Nakagawa So
- 准教授
- 学位：博士（理学）
基本情報
所属
- Undergraduate School of Medicine / Faculty of Medicine
- Graduate School of Medicine / Course of Advanced Medical Science
- Graduate School of Medicine / Course of Medical Science
- Micro/Nano Technology Center
研究と関連するSDGs
詳細情報
研究キーワード
- Multigene family
- zoonosis
- Metagenomics
- Viral Evolution
- Endogenous Retrovirus
- Retrotransposon
- Bioinformatics
- Retrovirus
- Comparative Genomics
- Molecular Evolution
研究分野
- Informatics Biological, health, and medical informatics
- Life sciences Virology
- Life sciences Genetics
- Life sciences Genomics
- Life sciences Evolutionary biology
委員歴
- Virus Evolution Associate Editor
- FEBS Open Bio Associate Editor
- Frontiers in Virology Associate Editor
受賞
- GGS PRIZE 2024 SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan
- The International Virus Bioinformatics Meeting ViBioM 2024 Best Scientific Poster Award Virome analysis of metatranscriptome data using NeoRdRp
- The Genetics Society of Japan Encouragement Award
- The Society of Evolutionary Studies, Japan Young Scientist Initiative Award
- Asian Young Researchers Conference on Computational and Omics Biology (AYRCOB) Best Oral Presentation Award Dynamic evolution of translation initiation mechanisms in prokaryotes
論文
Exploring the hidden world of RNA viruses with a transformer-based tool
Metagenomic analysis of the gut microbiota of hooded cranes (Grus monacha) on the Izumi plain in Japan.
Buccal Swab Samples from Japanese Brown Cattle Fed with Limonite Reveal Altered Rumen Microbiome
Amino acid influx via LAT1 regulates iron demand and sensitivity to PPMX-T003 of aggressive natural killer cell leukemia.
Aberrant expression of Human Endogenous Retrovirus K9-derived elements is associated with better clinical outcome of acute myelocytic leukemia
Effect of a FOXO1 inhibitor on trophoblast differentiation from human pluripotent stem cells and ERV-associated gene expression
Birth of protein-coding exons by ancient domestication of LINE retrotransposon
NeoRdRp2 with improved seed data, annotations, and scoring
Genes involved in the limited spread of SARS-CoV-2 in the lower respiratory airways of hamsters may be associated with adaptive evolution
Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
Rare CRHR2 and GRM8 variants identified as candidate factors associated with eating disorders in Japanese patients by whole exome sequencing
Two-step evolution of HIV-1 budding system leading to pandemic in the human population.
Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics
SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan
Current trends in RNA virus detection through metatranscriptome sequencing data.
Hepatic niche leads to aggressive natural killer cell leukemia proliferation through transferrin-transferrin receptor 1 axis.
Dynamic Evolution of Retroviral Envelope Genes in Egg-Laying Mammalian Genomes.
Genomic diversity of SARS-CoV-2 can be accelerated by mutations in the nsp14 gene.
Functional molecular evolution of a GTP sensing kinase: PI5P4Kβ.
Characterization of Megabat-Favored, CA-Dependent Susceptibility to Retrovirus Infection.
書籍等出版物
- Rapid bacterial identification method using nanopore DNA sequencer
- 遺伝?ゲノム学 新しいゲノム解析システムによる細菌感染症診断
- ナノポアシーケンサーを活用した感染症細菌叢ゲノムの迅速解析
- ナノポアシークエンサーが研究の常識を変える!リピート数が関与する疾患の診断に向けて サブテロメア領域のD4Z4マクロサテライトリピートを読む
- ナノポアシークエンサーが研究の常識を変える!迅速な細菌種の組成解析
講演?口頭発表等
- SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotypes spread in Japan
- Dynamic Evolution of Retroviral Envelope Genes in Egg-Laying Mammalian Genomes
- Genes downstream of ORF3 determine the replicative ability of SARS-CoV-2 in the lower respiratory airways of hamsters
- Diversity and dynamic evolution of RNA viruses revealed by massive nucleotide sequence data
- SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotypes spread in Japan
- Genomic diversity of SARS-CoV-2 can be accelerated by mutations in the nsp14 gene
- Endogenous retroviruses in egg-laying mammals and the fusogenic property of an envelope protein in echidna
所属学会
- The Visualization Society of Japan
- Japanese Society of Microbial Ecology
- THE SOCIETY OF BIOSOPHIA STUDIES
- THE JAPANESE SOCIETY FOR VIROLOGY
- JAPANESE SOCIETY FOR BIOINFORMATICS
- THE MOLECULAR BIOLOGY SOCIETY OF JAPAN
- THE GENETICS SOCIETY OF JAPAN
- SOCIETY OF EVOLUTIONARY STUDIES, JAPAN
- Society for Molecular Biology and Evolution
- Japan Association for Omics-baced Medicine
共同研究?競争的資金等の研究課題
Establishment of virome analysis system and molecular evolution analysis of newly identified viruses
Multi-omics analysis of endogenous non-retroviral viral elements in eukaryotic genomes
Comparative genome analysis of functional endogenous viral elements using massive nucleotide sequence data
Comparative evolutionary analysis of endogenous viral elements among mammals
メディア報道
- This 'double mutant' variant is adding fuel to India's COVID-19 crisis
- Virus - Is it a demon or an angel?
- Decoding the Coronavirus Genome
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